NAME

fu-rename - rename sequences

VERSION

version 1.5.0

SYNOPSIS

fu-cat [options] [FILE1 FILE2 FILE3...]

PARAMETERS

• -p, --prefix STRING

  New sequence name (accept placehodlers), default is "{b}"

• -s, --separator STRING

  Separator between prefix and sequence number

• -r, --reset

  Reset counter at each file

EXAMPLE

fu-rename -p '{b}' test.fa test2.fa > renamed.fa

Placeholders: {b} = File basename without extensions, and {B} = File basename with extension

MODERN ALTERNATIVE

This suite of tools has been superseded by SeqFu, a compiled program providing faster and safer tools for sequence analysis. This suite is maintained for the higher portability of Perl scripts under certain circumstances.

SeqFu is available at https://github.com/telatin/seqfu2, and can be installed with BioConda conda install -c bioconda seqfu

CITING

Telatin A, Fariselli P, Birolo G. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files. Bioengineering 2021, 8, 59. https://doi.org/10.3390/bioengineering8050059

AUTHOR

Andrea Telatin andrea@telatin.com

COPYRIGHT AND LICENSE

This software is Copyright (c) 2018-2022 by Andrea Telatin.

This is free software, licensed under:

The MIT (X11) License