NAME

fu-sort - Sort sequences by size

VERSION

version 1.5.0

EXAMPLES

fu-sort seq.fa > sorted.fa

PARAMETERS

• --asc

  Print in ascending order (defaul: descending)

• --al|add-length

  Add length=LEN to the comment

• --help

  This help

• --version

  Print version and exit

• --quiet

  No screen output (default OFF)

• --debug

  Debug mode (default OFF)

Common options

• --w|line-width [N]

  FASTA line size (0 for unlimited)

• --sc|strip-comments

  Strip comments

• --fasta

  Force FASTA output

• --fastq

  Force FASTQ output

• --rc

  Print reverse complementary

• --q|qual [n.n]

  Default quality for FASTQ files

• --u|upper

  Convert sequence to uppercase

MODERN ALTERNATIVE

This suite of tools has been superseded by SeqFu, a compiled program providing faster and safer tools for sequence analysis. This suite is maintained for the higher portability of Perl scripts under certain circumstances.

SeqFu is available at https://github.com/telatin/seqfu2, and can be installed with BioConda conda install -c bioconda seqfu

CITING

Telatin A, Fariselli P, Birolo G. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files. Bioengineering 2021, 8, 59. https://doi.org/10.3390/bioengineering8050059

AUTHOR

Andrea Telatin andrea@telatin.com

COPYRIGHT AND LICENSE

This software is Copyright (c) 2018-2022 by Andrea Telatin.

This is free software, licensed under:

The MIT (X11) License